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Software
- GPSDB a new
database for synonyms expansion of gene and
protein names
Reports
- Deliverable report D1.2-D1.4 (29 pages) [pdf]
- D1.2: Collection of domain-specific
knowledge sources to be used in information retrieval (IR) and
information extraction (IE)
- D1.3: Benchmarking environment for the
evaluation of IR component on SIWSS-PROT and PRINTS
- D1.4: Benchmarking environment for the
evaluation of ER component on SWISS-PROT and PRINTS
- Deliverable report D6.2: Evaluation report of first working
prototype (31 pages) [pdf]
- Deliverable report D8.1: List of EUC members [txt]
- Deliverable report D10.5:
- Year 1 technology watch report
(10
pages) [pdf]
- Year 2 technology watch report (13 pages) [pdf]
- Deliverable report D10.5: Yearly technology watch report
(10
pages) [pdf]
- Publications, presentations, and reports:
- A.K. Seewald. Evaluating
Protein Name Recognition: An Automatic Approach. Workshop on
Data Mining and Text Mining for BioInformatics, 14th European
Conference on Machine Learning (ECML-2003), Dubrovnik-Cavtat, Croatia,
2003 (5 pages). [pdf]
- A.K. Seewald. Recognizing
Domain and Species from MEDLINE Proteomics Publications.
Workshop on Data Mining and Text Mining for BioInformatics, 14th
European Conference on Machine Learning (ECML-2003), Dubrovnik-Cavtat,
Croatia, 2003 (8 pages). [pdf]
- M. Hilario, A. Mitchell, J.-H. Kim, P. Bradley, T.
Attwood. Classifying Protein
Fingerprints. PKDD-2004 (12 pages). Joint publication:
UMan +
UNIGE [pdf]
- Winner "Best PKDD Paper"
award.
- L. Dehaspe. Great Expectations: A to-do list for the
Biologist’s in Silico Research Assistant. Invited talk at the
Workshop on Data Mining and Text Mining for BioInformatics, 14th
European Conference on Machine Learning (ECML-2003), Dubrovnik-Cavtat,
Croatia, 2003 (41 slides). [pdf]
- A.K. Seewald. Report on COST 282 - Mission Ireland (19.02
-
25.02.2004) (1 page) [txt]
- A.K. Seewald. Presentation on BioMinT at the COST 282
meeting, Nice, 8-9 January, 2004 (11 slides) [pdf]
- T. Attwood et all. BioMinT: A database curator's
assistant for biomedical text processing. ISMB/ECCB 2004 Special
Interest Group BioLink
, Glasgow, U.K. Joint publication: all partners (1 page) [pdf]
- A.K. Seewald. Ranking for BioMinT: Investigating
Performance, Local Search and Homonymy Recognition. Proceedings of the
Symposium on Knowledge Exploration in Life Science Informatics (KELSI
2004), Milano, Italy.
Also available as Technical Report, Österreichisches
Forschungsinstitut für Artificial Intelligence Wien, TR-2004-14,
2004. [pdf]
- V. Pillet, M. Zehnder, A.K. Seewald, A.-L. Veuthey, and
J. Petrak. GPSDB: a new database for synonyms expansion of gene and
protein names. Bioinformatics
2005 21: 1743-1744. Joint publication:
SIB + OFAI (2 pages)
- L. Dehaspe et all. BioMinT: the research assistant for
biological text mining, Knowledge for
Growth 2005 (Annual Flemish Biotech convention), Gent, June 3,
2005. Joint publication: all partners. (abstract [pdf,doc],
poster [ppt],
slides [pdf,ppt]).
- A.L. Mitchell, A. Divoli, J.-H. Kim, M. Hilario, I.
Selimas, and T.K. Attwood. METIS: multiple extraction techniques for
informative sentences. Bioinformatics
2005. (2 pages) Joint publication: UMan +
UNIGE.
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